LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_82.5wLII_11067_33
Total number of 3D structures: 60
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1w26_A
432
428
356
2.02
14.33
64.180
16.760
T P
1t11_A
376
428
120
1.68
11.67
26.015
6.755
T P
1oms_C
118
428
105
1.53
17.14
23.737
6.453
T P
1p9y_A
117
428
102
1.41
18.63
23.308
6.739
T P
1zxj_D
193
428
109
2.19
19.27
19.758
4.765
T P
2nsa_A
167
428
107
2.08
14.02
19.403
4.916
T P
1q1c_A
237
428
91
1.81
10.99
18.932
4.765
T P
2vn1_B
123
428
87
1.84
9.20
18.308
4.473
T P
1n1a_A
121
428
86
1.74
11.63
18.138
4.665
T P
2ppn_A
107
428
84
1.78
10.71
18.021
4.478
T P
1r9h_A
118
428
85
1.84
8.24
18.003
4.391
T P
1bkf_A
107
428
85
1.87
10.59
18.001
4.311
T P
2ppp_A
107
428
84
1.76
10.71
17.966
4.523
T P
1fd9_A
204
428
84
1.72
9.52
17.948
4.621
T P
2ppo_A
107
428
84
1.83
10.71
17.892
4.358
T P
2pbc_A
100
428
85
1.80
20.00
17.883
4.467
T P
1q6u_A
213
428
84
1.79
13.10
17.843
4.439
T P
1bl4_A
107
428
82
1.72
9.76
17.795
4.497
T P
1yat_A
113
428
84
1.86
10.71
17.762
4.294
T P
2dg4_A
107
428
85
1.93
11.76
17.692
4.179
T P
1tco_C
107
428
84
1.84
9.52
17.614
4.336
T P
1pbk_A
116
428
82
1.75
17.07
17.522
4.438
T P
1rot_A
118
428
83
1.78
12.05
17.483
4.414
T P
1q6h_A
210
428
82
1.81
13.41
17.462
4.303
T P
1hxv_A
85
428
84
1.85
11.90
17.442
4.297
T P
2dg9_A
107
428
85
1.94
10.59
17.407
4.161
T P
1u79_A
125
428
82
1.81
13.41
17.404
4.302
T P
1eym_A
107
428
84
1.89
9.52
17.371
4.213
T P
1fkl_A
107
428
84
1.93
10.71
17.285
4.147
T P
1c9h_A
107
428
82
1.85
12.20
17.201
4.199
T P
1kt1_A
374
428
88
2.25
14.77
17.135
3.737
T P
1ix5_A
151
428
80
1.78
12.50
15.855
4.253
T P
1jvw_A
160
428
84
2.05
15.48
15.548
3.912
T P
2aar_7
113
428
89
2.24
15.73
15.116
3.807
T P
1m5y_D
389
428
79
2.16
6.33
14.313
3.491
T P
2ofn_A
135
428
81
2.11
8.64
14.175
3.668
T P
2uz5_A
137
428
78
2.01
10.26
14.066
3.693
T P
1l1p_A
106
428
77
2.17
11.69
12.720
3.396
T P
2nsc_A
109
428
74
2.26
14.86
12.382
3.138
T P
1jqo_A
904
428
75
2.60
10.67
11.727
2.782
T P
1vdk_A
458
428
59
2.36
11.86
10.979
2.402
T P
2d3o_1
100
428
69
2.43
8.70
10.845
2.722
T P
1qvr_A
803
428
64
2.43
9.38
10.230
2.527
T P
2h94_A
647
428
59
2.60
11.86
9.829
2.189
T P
2pv3_A
284
428
55
2.27
10.91
9.762
2.316
T P
2z3y_A
643
428
61
2.58
8.20
9.688
2.280
T P
2dw4_A
634
428
57
2.52
5.26
9.325
2.177
T P
1pjh_B
260
428
57
2.59
10.53
9.090
2.116
T P
1tya_E
317
428
51
2.38
13.73
8.947
2.052
T P
1tyc_A
317
428
51
2.36
11.76
8.934
2.072
T P
2iw5_A
666
428
63
2.95
3.17
8.792
2.069
T P
2v1d_A
666
428
58
2.86
5.17
8.761
1.960
T P
1tyd_E
317
428
51
2.56
13.73
8.674
1.917
T P
1tyb_E
317
428
51
2.57
13.73
8.655
1.911
T P
2hko_A
647
428
53
2.56
3.77
8.578
1.994
T P
4ts1_A
317
428
51
2.44
5.88
8.574
2.006
T P
2ts1_A
317
428
51
2.53
3.92
8.465
1.936
T P
1pmi_A
440
428
47
2.65
2.13
7.385
1.707
T P
1q2l_A
937
428
41
2.27
7.32
7.012
1.730
T P
1w2b_5
35
428
28
1.96
14.29
5.008
1.362
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]