LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_85.5wLII_11067_43
Total number of 3D structures: 63
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1deq_A
180
87
50
1.27
22.00
55.878
3.658
T P
1jk0_A
334
87
55
1.99
5.45
55.551
2.635
T P
2dq3_A
425
87
57
2.16
7.02
52.275
2.520
T P
1bf5_A
545
87
55
2.07
9.09
49.650
2.539
T P
1yvl_B
653
87
50
2.04
12.00
48.451
2.340
T P
1wle_B
469
87
55
2.33
16.36
47.999
2.260
T P
2dq0_A
447
87
51
2.16
5.88
46.094
2.256
T P
1ses_A
421
87
53
2.23
11.32
44.696
2.277
T P
1smq_A
329
87
50
2.15
6.00
44.675
2.226
T P
1cii_A
602
87
58
2.52
6.90
44.409
2.217
T P
1jch_A
468
87
49
2.35
14.29
43.291
1.999
T P
1rrj_A
565
87
52
2.52
7.69
43.174
1.985
T P
2b5u_A
470
87
49
2.49
10.20
42.300
1.890
T P
1n52_A
732
87
52
2.60
9.62
42.042
1.929
T P
3ffz_A
1246
87
48
2.22
0.00
41.192
2.071
T P
2hko_A
647
87
53
2.64
9.43
41.091
1.935
T P
2uv8_A
1613
87
51
2.51
7.84
41.032
1.952
T P
2vkz_A
1614
87
53
2.76
11.32
40.827
1.850
T P
2h94_A
647
87
50
2.67
10.00
40.634
1.803
T P
1nt2_B
236
87
51
2.65
7.84
40.497
1.856
T P
2z3y_A
643
87
49
2.59
10.20
39.726
1.819
T P
2pff_A
1683
87
47
2.39
8.51
39.652
1.889
T P
1lrz_A
400
87
47
2.46
6.38
39.618
1.837
T P
2iw5_A
666
87
47
2.56
8.51
39.535
1.769
T P
1qvr_A
803
87
47
2.42
2.13
38.889
1.868
T P
1zvu_A
685
87
44
2.34
9.09
38.624
1.807
T P
2dw4_A
634
87
47
2.49
14.89
38.259
1.814
T P
1ha0_A
494
87
37
1.70
2.70
37.849
2.057
T P
2v1d_A
666
87
49
2.56
10.20
37.654
1.841
T P
2zuo_A
812
87
39
2.05
12.82
37.539
1.812
T P
1lpq_A
557
87
46
2.56
13.04
37.167
1.732
T P
1seu_A
565
87
46
2.38
10.87
36.948
1.856
T P
1h2v_C
722
87
46
2.47
6.52
36.759
1.788
T P
1h6k_C
733
87
46
2.42
15.22
36.680
1.825
T P
1bg1_A
559
87
39
2.38
7.69
36.139
1.571
T P
2rd0_B
139
87
44
2.82
2.27
35.732
1.508
T P
1pix_A
586
87
43
2.51
6.98
35.177
1.646
T P
1k4t_A
565
87
42
2.34
11.90
34.888
1.724
T P
2cly_A
105
87
30
1.48
0.00
34.029
1.895
T P
2qzv_A
749
87
37
2.25
13.51
33.866
1.575
T P
3eyk_B
172
87
39
2.48
7.69
33.187
1.512
T P
3eym_B
172
87
41
2.40
7.32
33.176
1.640
T P
1mqm_B
172
87
41
2.48
9.76
32.916
1.591
T P
1f5n_A
570
87
38
2.39
7.89
32.603
1.528
T P
2iqi_F
175
87
32
2.09
3.12
32.357
1.461
T P
1yuw_A
554
87
40
2.39
5.00
32.203
1.604
T P
1ii8_A
195
87
34
2.17
2.94
31.879
1.495
T P
2bde_A
458
87
38
2.60
2.63
31.451
1.406
T P
2ve7_B
303
87
34
2.24
17.65
30.397
1.450
T P
2viu_B
175
87
39
2.72
2.56
29.585
1.382
T P
2zux_A
582
87
38
2.44
13.16
29.539
1.496
T P
1y1u_A
544
87
38
2.88
5.26
29.120
1.274
T P
1giq_A
411
87
34
2.42
8.82
27.771
1.349
T P
1c1g_A
284
87
29
2.45
0.00
27.354
1.136
T P
1oqy_A
363
87
31
2.30
9.68
27.319
1.290
T P
1ei3_C
397
87
36
2.88
5.56
26.071
1.208
T P
2tec_E
279
87
30
2.58
10.00
25.289
1.118
T P
3cwg_B
507
87
30
2.62
10.00
24.647
1.104
T P
1thm_A
279
87
25
2.46
0.00
22.774
0.978
T P
1m1j_C
390
87
29
2.96
6.90
22.110
0.948
T P
1arb_A
263
87
28
2.79
0.00
20.496
0.969
T P
1nkg_A
508
87
24
2.63
4.17
19.610
0.881
T P
2wb7_A
525
87
14
2.64
0.00
12.375
0.511
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]