LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_88.5wLII_11068_5
Total number of 3D structures: 81
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2eyq_A
1146
217
113
2.11
12.39
46.000
5.123
T P
1t5l_A
595
217
89
2.11
11.24
32.603
4.020
T P
2d7d_A
621
217
89
2.28
10.11
30.571
3.742
T P
2fdc_B
585
217
82
2.06
8.54
30.041
3.798
T P
1d9z_A
590
217
88
2.13
10.23
29.705
3.952
T P
1d9x_A
590
217
83
2.20
9.64
29.357
3.601
T P
3eaq_B
209
217
80
2.10
7.50
28.978
3.640
T P
1hv8_A
363
217
87
2.30
9.20
27.931
3.631
T P
1gm5_A
729
217
84
2.26
13.10
27.789
3.558
T P
2i4i_A
408
217
83
2.26
7.23
27.441
3.512
T P
1t5i_A
159
217
83
2.25
4.82
27.424
3.530
T P
3ews_A
416
217
85
2.28
14.12
27.414
3.571
T P
1fuk_A
157
217
81
2.18
8.64
26.923
3.559
T P
1oyw_A
516
217
80
2.24
12.50
26.487
3.423
T P
2jgn_B
161
217
81
2.22
8.64
26.407
3.497
T P
2p6n_A
160
217
83
2.24
10.84
26.343
3.553
T P
2db3_A
420
217
80
2.21
5.00
26.168
3.458
T P
2vso_A
366
217
80
2.40
11.25
25.679
3.199
T P
2p6r_A
683
217
83
2.52
12.05
25.361
3.169
T P
1wp9_A
479
217
81
2.33
9.88
24.603
3.327
T P
2z0m_A
331
217
82
2.48
9.76
24.500
3.173
T P
2hyi_C
392
217
82
2.50
7.32
24.392
3.155
T P
1xtj_A
374
217
75
2.25
5.33
24.312
3.188
T P
3eiq_D
371
217
79
2.42
8.86
24.031
3.129
T P
3fht_A
392
217
75
2.28
13.33
23.870
3.156
T P
3g0h_A
408
217
74
2.28
13.51
23.843
3.106
T P
1xtk_A
382
217
80
2.49
7.50
23.498
3.092
T P
2rb4_A
164
217
76
2.37
6.58
23.482
3.082
T P
2g2j_A
158
217
72
2.27
9.72
23.392
3.036
T P
2j0s_A
391
217
77
2.44
6.49
23.316
3.034
T P
2fzl_A
197
217
70
2.21
8.57
22.996
3.024
T P
1xti_A
381
217
69
2.13
5.80
22.386
3.096
T P
2hjv_A
158
217
70
2.32
5.71
22.343
2.898
T P
1s2m_A
377
217
76
2.51
9.21
22.268
2.909
T P
2zu6_C
351
217
75
2.50
9.33
21.963
2.884
T P
1fuu_B
380
217
77
2.63
6.49
21.806
2.818
T P
2j0u_A
366
217
64
2.57
1.56
19.771
2.394
T P
2hxy_A
376
217
68
2.73
10.29
19.599
2.403
T P
2j0u_B
347
217
69
2.80
8.70
19.528
2.380
T P
2ahu_A
515
217
62
2.60
11.29
18.756
2.299
T P
1qvr_A
803
217
59
2.58
13.56
18.462
2.199
T P
1wz2_A
948
217
59
2.67
6.78
18.132
2.132
T P
1yuw_A
554
217
56
2.77
1.79
17.711
1.948
T P
2z3y_A
643
217
55
2.81
5.45
16.651
1.889
T P
2fwr_A
434
217
53
2.53
7.55
16.388
2.015
T P
2h94_A
647
217
52
2.81
7.69
15.891
1.790
T P
2iw5_A
666
217
52
2.73
3.85
15.746
1.838
T P
3cwg_B
507
217
49
2.74
4.08
15.128
1.727
T P
1lrz_A
400
217
44
2.37
6.82
15.101
1.784
T P
1pyy_A
607
217
49
2.73
4.08
14.997
1.730
T P
1znn_A
245
217
48
2.61
12.50
14.922
1.769
T P
1bg1_A
559
217
48
2.67
6.25
14.756
1.732
T P
1ei3_C
397
217
43
2.69
4.65
13.992
1.542
T P
2hko_A
647
217
42
2.70
9.52
13.680
1.502
T P
1rp5_A
687
217
39
2.32
0.00
13.322
1.613
T P
1f5n_A
570
217
40
2.55
5.00
13.086
1.511
T P
1ha0_A
494
217
41
2.62
2.44
13.060
1.510
T P
1cii_A
602
217
39
2.40
12.82
13.052
1.562
T P
2iss_B
285
217
43
2.83
6.98
12.699
1.468
T P
1m1j_C
390
217
40
2.66
5.00
12.680
1.450
T P
1pmd_A
675
217
39
2.67
5.13
12.650
1.407
T P
1mqm_B
172
217
38
2.24
10.53
12.510
1.623
T P
2inr_A
442
217
40
2.65
12.50
12.398
1.454
T P
3eyk_B
172
217
39
2.77
2.56
12.142
1.361
T P
3eym_B
172
217
39
2.57
0.00
11.871
1.463
T P
5hmg_B
175
217
35
2.50
2.86
11.437
1.348
T P
2v1d_A
666
217
38
2.76
0.00
11.252
1.330
T P
1qu7_A
227
217
32
2.28
6.25
10.995
1.343
T P
1deq_A
180
217
33
2.51
6.06
10.885
1.262
T P
2ch7_A
309
217
29
2.28
0.00
10.801
1.220
T P
2ch7_B
307
217
28
2.18
7.14
10.732
1.230
T P
2qdl_A
154
217
37
2.84
5.41
10.520
1.257
T P
2rd0_B
139
217
29
2.26
13.79
10.444
1.229
T P
2v0o_A
273
217
32
2.61
0.00
10.293
1.181
T P
1kmi_Z
177
217
29
2.51
10.34
10.156
1.110
T P
2viu_B
175
217
28
2.72
3.57
9.147
0.994
T P
1c07_A
95
217
29
2.60
3.45
8.865
1.074
T P
1c1g_A
284
217
27
2.63
7.41
8.216
0.988
T P
1qu1_F
155
217
27
2.97
7.41
7.985
0.880
T P
2dw4_A
634
217
21
2.51
4.76
7.374
0.803
T P
2pl9_D
19
217
17
1.71
0.00
7.337
0.938
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]