LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_93.5wLII_11068_42
Total number of 3D structures: 57
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1xxi_C
366
361
334
0.88
19.76
90.845
34.120
T P
1jr3_A
366
361
332
1.09
19.58
88.870
27.961
T P
1njg_A
240
361
214
1.09
21.50
57.035
17.912
T P
1iqp_A
326
361
223
2.32
18.39
42.885
9.227
T P
2chq_A
313
361
230
2.44
16.52
41.465
9.038
T P
1sxj_E
317
361
195
1.94
15.38
41.402
9.540
T P
1sxj_A
441
361
214
2.42
14.49
40.069
8.502
T P
2chg_A
223
361
190
2.03
20.53
38.844
8.941
T P
1sxj_C
322
361
226
2.57
9.73
38.743
8.452
T P
1sxj_B
316
361
220
2.54
12.73
37.786
8.340
T P
1in8_A
298
361
185
2.20
20.00
37.319
8.059
T P
1in6_A
300
361
185
2.21
19.46
37.251
8.024
T P
1in5_A
301
361
186
2.21
20.43
36.928
8.052
T P
1in4_A
298
361
185
2.22
20.54
36.880
7.973
T P
1sxj_D
328
361
201
2.52
12.94
36.757
7.675
T P
1j7k_A
299
361
181
2.22
20.99
36.058
7.811
T P
1in7_A
298
361
185
2.23
19.46
35.248
7.924
T P
1iy2_A
245
361
164
2.28
13.41
33.269
6.890
T P
1xxh_E
334
361
177
2.49
15.82
33.174
6.825
T P
2v1u_A
382
361
177
2.32
19.21
32.702
7.305
T P
3eie_A
303
361
157
2.22
15.29
32.595
6.779
T P
3b9p_A
268
361
161
2.35
14.91
32.586
6.563
T P
1hqc_A
314
361
173
2.33
20.81
32.543
7.106
T P
3eih_A
319
361
167
2.26
15.57
32.539
7.064
T P
3d8b_A
281
361
166
2.24
14.46
32.388
7.092
T P
1ixs_B
315
361
176
2.25
19.89
32.256
7.480
T P
2rko_A
280
361
155
2.19
14.19
32.137
6.756
T P
3cf0_A
281
361
158
2.28
12.66
31.873
6.652
T P
1s3s_F
441
361
165
2.27
13.94
31.650
6.959
T P
2qby_A
366
361
174
2.32
17.82
31.336
7.187
T P
3cf2_A
659
361
165
2.32
12.73
31.230
6.824
T P
1r7r_A
683
361
163
2.27
14.11
31.005
6.863
T P
2ce7_C
421
361
157
2.17
14.65
30.877
6.923
T P
1ixr_C
308
361
172
2.40
19.77
30.833
6.874
T P
2dhr_A
458
361
169
2.48
15.98
30.675
6.551
T P
2c9o_A
398
361
163
2.24
14.72
30.604
6.962
T P
2qp9_X
288
361
161
2.29
15.53
30.586
6.744
T P
1ypw_A
692
361
161
2.28
13.04
30.572
6.754
T P
1ixz_A
238
361
145
2.27
14.48
30.212
6.115
T P
1yqi_C
708
361
159
2.28
13.84
30.069
6.670
T P
2qz4_A
223
361
152
2.31
15.79
29.638
6.311
T P
1d2n_A
246
361
157
2.31
14.65
29.362
6.503
T P
2zan_A
312
361
154
2.31
16.88
29.268
6.390
T P
1xwi_A
322
361
155
2.19
14.84
29.179
6.765
T P
2gno_A
296
361
153
2.41
15.03
29.173
6.104
T P
1nsf_A
247
361
153
2.30
15.69
28.705
6.371
T P
1ofh_A
309
361
157
2.34
17.20
28.544
6.435
T P
1lv7_A
251
361
161
2.41
13.66
28.494
6.405
T P
1r6b_X
704
361
160
2.43
11.25
28.226
6.332
T P
2r62_A
249
361
159
2.49
15.09
28.060
6.150
T P
1qvr_A
803
361
144
2.44
17.36
25.509
5.676
T P
1jbk_A
189
361
111
2.24
19.82
22.245
4.742
T P
2p65_A
185
361
105
2.23
20.95
20.056
4.509
T P
3bge_A
163
361
72
2.35
4.17
15.142
2.939
T P
3ctd_B
158
361
71
2.29
2.82
14.717
2.967
T P
2r9g_L
188
361
64
1.92
4.69
14.091
3.171
T P
2qw6_D
86
361
61
2.65
8.20
11.158
2.222
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]